diff --git a/ROMFS/px4fmu_common/init.d/rcS b/ROMFS/px4fmu_common/init.d/rcS
index 70938adeed..becfa79a87 100644
--- a/ROMFS/px4fmu_common/init.d/rcS
+++ b/ROMFS/px4fmu_common/init.d/rcS
@@ -99,15 +99,6 @@ then
 	#then
 	#fi
 
-	if ver hwcmp AEROFC_V1
-	then
-		if param compare SYS_AUTOSTART 0
-		then
-			param set SYS_AUTOCONFIG 1
-			param set SYS_AUTOSTART 4070
-		fi
-	fi
-
 	#
 	# Set AUTOCNF flag to use it in AUTOSTART scripts
 	#
@@ -194,6 +185,15 @@ then
 		set USE_IO no
 	fi
 
+	if ver hwcmp AEROFC_V1
+	then
+		if param compare SYS_AUTOSTART 0
+		then
+			set AUTOCNF yes
+		fi
+		param set SYS_AUTOSTART 4070
+	fi
+
 	#
 	# Set parameters and env variables for selected AUTOSTART
 	#