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Use a single inverse implementation for a single matrix size
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@ -4,6 +4,7 @@
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* Implementation of matrix pseudo inverse
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*
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* @author Julien Lecoeur <julien.lecoeur@gmail.com>
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* @author Julian Kent <julian@auterion.com>
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*/
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#pragma once
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@ -13,17 +14,6 @@
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namespace matrix
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{
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/**
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* Full rank Cholesky factorization of A
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*/
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template<typename Type, size_t N>
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SquareMatrix<Type, N> fullRankCholesky(const SquareMatrix<Type, N> & A, size_t& rank);
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/**
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* Geninv implementation detail
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*/
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template<typename Type, size_t M, size_t N, size_t R> class GeninvImpl;
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/**
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* Geninv
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* Fast pseudoinverse based on full rank cholesky factorisation
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@ -38,18 +28,84 @@ Matrix<Type, N, M> geninv(const Matrix<Type, M, N> & G)
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SquareMatrix<Type, M> A = G * G.transpose();
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SquareMatrix<Type, M> L = fullRankCholesky(A, rank);
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return GeninvImpl<Type, M, N, M>::genInvUnderdetermined(G, L, rank);
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SquareMatrix<Type, M> LtL = L.transpose() * L;
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SquareMatrix<Type, M> X;
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if (!inv(LtL, X, rank)) {
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return Matrix<Type, N, M>(); // LCOV_EXCL_LINE -- this can only be hit from numerical issues
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}
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return G.transpose() * L * X * X * L.transpose();
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} else {
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SquareMatrix<Type, N> A = G.transpose() * G;
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SquareMatrix<Type, N> L = fullRankCholesky(A, rank);
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return GeninvImpl<Type, M, N, N>::genInvOverdetermined(G, L, rank);
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SquareMatrix<Type, N> LtL = L.transpose() * L;
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SquareMatrix<Type, N> X;
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if(!inv(LtL, X, rank)) {
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return Matrix<Type, N, M>(); // LCOV_EXCL_LINE -- this can only be hit from numerical issues
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}
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return L * X * X * L.transpose() * G.transpose();
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}
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}
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#include "PseudoInverse.hxx"
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template<typename Type>
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Type typeEpsilon();
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template<> inline
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float typeEpsilon<float>()
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{
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return FLT_EPSILON;
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}
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/**
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* Full rank Cholesky factorization of A
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*/
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template<typename Type, size_t N>
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SquareMatrix<Type, N> fullRankCholesky(const SquareMatrix<Type, N> & A,
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size_t& rank)
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{
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// Loses one ulp accuracy per row of diag, relative to largest magnitude
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const Type tol = N * typeEpsilon<Type>() * A.diag().max();
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Matrix<Type, N, N> L;
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size_t r = 0;
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for (size_t k = 0; k < N; k++) {
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if (r == 0) {
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for (size_t i = k; i < N; i++) {
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L(i, r) = A(i, k);
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}
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} else {
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for (size_t i = k; i < N; i++) {
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// Compute LL = L[k:n, :r] * L[k, :r].T
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Type LL = Type();
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for (size_t j = 0; j < r; j++) {
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LL += L(i, j) * L(k, j);
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}
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L(i, r) = A(i, k) - LL;
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}
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}
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if (L(k, r) > tol) {
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L(k, r) = sqrt(L(k, r));
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if (k < N - 1) {
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for (size_t i = k + 1; i < N; i++) {
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L(i, r) = L(i, r) / L(k, r);
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}
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}
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r = r + 1;
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}
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}
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// Return rank
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rank = r;
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return L;
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}
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} // namespace matrix
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@ -1,126 +0,0 @@
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/**
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* @file pseudoinverse.hxx
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*
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* Implementation of matrix pseudo inverse
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*
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* @author Julien Lecoeur <julien.lecoeur@gmail.com>
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*/
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/**
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* Full rank Cholesky factorization of A
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*/
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template<typename Type>
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Type typeEpsilon();
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template<> inline
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float typeEpsilon<float>()
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{
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return FLT_EPSILON;
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}
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template<typename Type, size_t N>
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SquareMatrix<Type, N> fullRankCholesky(const SquareMatrix<Type, N> & A,
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size_t& rank)
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{
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// Loses one ulp accuracy per row of diag, relative to largest magnitude
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const Type tol = N * typeEpsilon<Type>() * A.diag().max();
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Matrix<Type, N, N> L;
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size_t r = 0;
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for (size_t k = 0; k < N; k++) {
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if (r == 0) {
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for (size_t i = k; i < N; i++) {
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L(i, r) = A(i, k);
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}
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} else {
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for (size_t i = k; i < N; i++) {
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// Compute LL = L[k:n, :r] * L[k, :r].T
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Type LL = Type();
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for (size_t j = 0; j < r; j++) {
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LL += L(i, j) * L(k, j);
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}
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L(i, r) = A(i, k) - LL;
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}
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}
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if (L(k, r) > tol) {
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L(k, r) = sqrt(L(k, r));
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if (k < N - 1) {
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for (size_t i = k + 1; i < N; i++) {
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L(i, r) = L(i, r) / L(k, r);
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}
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}
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r = r + 1;
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}
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}
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// Return rank
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rank = r;
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return L;
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}
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template< typename Type, size_t M, size_t N, size_t R>
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class GeninvImpl
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{
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public:
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static Matrix<Type, N, M> genInvUnderdetermined(const Matrix<Type, M, N> & G, const Matrix<Type, M, M> & L, size_t rank)
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{
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if (rank < R) {
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// Recursive call
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return GeninvImpl<Type, M, N, R - 1>::genInvUnderdetermined(G, L, rank);
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} else if (rank > R) {
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// Error
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return Matrix<Type, N, M>();
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} else {
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// R == rank
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Matrix<Type, M, R> LL = L. template slice<M, R>(0, 0);
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SquareMatrix<Type, R> X = inv(SquareMatrix<Type, R>(LL.transpose() * LL));
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return G.transpose() * LL * X * X * LL.transpose();
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}
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}
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static Matrix<Type, N, M> genInvOverdetermined(const Matrix<Type, M, N> & G, const Matrix<Type, N, N> & L, size_t rank)
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{
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if (rank < R) {
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// Recursive call
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return GeninvImpl<Type, M, N, R - 1>::genInvOverdetermined(G, L, rank);
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} else if (rank > R) {
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// Error
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return Matrix<Type, N, M>();
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} else {
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// R == rank
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Matrix<Type, N, R> LL = L. template slice<N, R>(0, 0);
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SquareMatrix<Type, R> X = inv(SquareMatrix<Type, R>(LL.transpose() * LL));
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return LL * X * X * LL.transpose() * G.transpose();
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}
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}
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};
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// Partial template specialisation for R==0, allows to stop recursion in genInvUnderdetermined and genInvOverdetermined
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template< typename Type, size_t M, size_t N>
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class GeninvImpl<Type, M, N, 0>
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{
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public:
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static Matrix<Type, N, M> genInvUnderdetermined(const Matrix<Type, M, N> & G, const Matrix<Type, M, M> & L, size_t rank)
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{
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return Matrix<Type, N, M>();
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}
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static Matrix<Type, N, M> genInvOverdetermined(const Matrix<Type, M, N> & G, const Matrix<Type, N, N> & L, size_t rank)
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{
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return Matrix<Type, N, M>();
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}
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};
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@ -305,7 +305,7 @@ SquareMatrix<Type, M> expm(const Matrix<Type, M, M> & A, size_t order=5)
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* inverse based on LU factorization with partial pivotting
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*/
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template<typename Type, size_t M>
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bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv, size_t rank = M)
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{
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SquareMatrix<Type, M> L;
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L.setIdentity();
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@ -316,12 +316,12 @@ bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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//printf("A:\n"); A.print();
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// for all diagonal elements
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for (size_t n = 0; n < M; n++) {
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for (size_t n = 0; n < rank; n++) {
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// if diagonal is zero, swap with row below
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if (fabs(static_cast<float>(U(n, n))) < FLT_EPSILON) {
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//printf("trying pivot for row %d\n",n);
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for (size_t i = n + 1; i < M; i++) {
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for (size_t i = n + 1; i < rank; i++) {
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//printf("\ttrying row %d\n",i);
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if (fabs(static_cast<float>(U(i, n))) > 1e-8f) {
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@ -349,12 +349,12 @@ bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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}
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// for all rows below diagonal
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for (size_t i = (n + 1); i < M; i++) {
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for (size_t i = (n + 1); i < rank; i++) {
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L(i, n) = U(i, n) / U(n, n);
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// add i-th row and n-th row
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// multiplied by: -a(i,n)/a(n,n)
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for (size_t k = n; k < M; k++) {
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for (size_t k = n; k < rank; k++) {
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U(i, k) -= L(i, n) * U(n, k);
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}
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}
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@ -367,9 +367,9 @@ bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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//SquareMatrix<Type, M> Y = P;
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// for all columns of Y
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for (size_t c = 0; c < M; c++) {
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for (size_t c = 0; c < rank; c++) {
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// for all rows of L
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for (size_t i = 0; i < M; i++) {
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for (size_t i = 0; i < rank; i++) {
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// for all columns of L
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for (size_t j = 0; j < i; j++) {
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// for all existing y
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@ -392,14 +392,14 @@ bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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//SquareMatrix<Type, M> X = Y;
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// for all columns of X
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for (size_t c = 0; c < M; c++) {
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for (size_t c = 0; c < rank; c++) {
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// for all rows of U
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for (size_t k = 0; k < M; k++) {
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for (size_t k = 0; k < rank; k++) {
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// have to go in reverse order
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size_t i = M - 1 - k;
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size_t i = rank - 1 - k;
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// for all columns of U
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for (size_t j = i + 1; j < M; j++) {
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for (size_t j = i + 1; j < rank; j++) {
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// for all existing x
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// subtract the component they
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// contribute to the solution
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@ -416,8 +416,8 @@ bool inv(const SquareMatrix<Type, M> & A, SquareMatrix<Type, M> & inv)
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}
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//check sanity of results
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for (size_t i = 0; i < M; i++) {
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for (size_t j = 0; j < M; j++) {
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for (size_t i = 0; i < rank; i++) {
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for (size_t j = 0; j < rank; j++) {
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if (!is_finite(P(i,j))) {
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return false;
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}
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@ -111,22 +111,6 @@ int main()
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Matrix<float, 16, 6> A = geninv(B);
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TEST((A - A_check).abs().max() < 1e-5);
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// Test error case with erroneous rank in internal impl functions
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Matrix<float, 2, 2> L;
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Matrix<float, 2, 3> GM;
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Matrix<float, 3, 2> retM_check;
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Matrix<float, 3, 2> retM0 = GeninvImpl<float, 2, 3, 0>::genInvUnderdetermined(GM, L, 5);
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Matrix<float, 3, 2> GN;
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Matrix<float, 2, 3> retN_check;
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Matrix<float, 2, 3> retN0 = GeninvImpl<float, 3, 2, 0>::genInvOverdetermined(GN, L, 5);
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TEST((retM0 - retM_check).abs().max() < 1e-5);
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TEST((retN0 - retN_check).abs().max() < 1e-5);
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Matrix<float, 3, 2> retM1 = GeninvImpl<float, 2, 3, 1>::genInvUnderdetermined(GM, L, 5);
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Matrix<float, 2, 3> retN1 = GeninvImpl<float, 3, 2, 1>::genInvOverdetermined(GN, L, 5);
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TEST((retM1 - retM_check).abs().max() < 1e-5);
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TEST((retN1 - retN_check).abs().max() < 1e-5);
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// Real-world test case
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const float real_alloc[5][6] = {
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{ 0.794079, 0.794079, 0.794079, 0.794079, 0.0000, 0.0000},
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